Software

Native AnnData support in R for seamless interoperability between Python and Bioconductor single-cell workflows.

A normalization tool for the removal of batch effects in cytometry data.

An open set of packages to benchmark, construct and interpret single-cell trajectories.

The go to tool to cluster your cytometry data.

A modular framework for scalable and reproducible analysis of spatial omics and proteomics data.

A tool to study intercellular communication from a computational perspective.

A quality control tool to remove erroneous events happening during acquisition.

A scalable, reproducible and open-source pipeline for morphologically profiling image cytometry data.

A scalable and interactive pipeline for segmentation, annotation, and quality control of spatial transcriptomics data.

A Nextflow pipeline to run and benchmark 11 spatial deconvolution methods.